User:DCDuring/List of sequenced animal genone/List of sequenced animal genomes 2016
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See also
[edit]List of sequenced animal genomes on Wikipedia.Wikipedia
- Amphimedon queenslandica, Amphimedon, a sponge (2009[1])
- Trichoplax adhaerens, Trichoplax, a Placozoan (2008[2])
- Hydra magnipapillata, Hydra, a model medusozoan (2010[3])
- Nematostella vectensis, Nematostella, a model anemone (starlet sea anemone) (2007[4])
Deuterostomia
[edit]Echinoderms
[edit]- Strongylocentrotus purpuratus, a sea urchin and model deuterostome, Strongylocentrotus (2006[5])
Hemichordates
[edit]- Saccoglossus kowalevskii, Saccoglossus, an acorn worm (2009)[6])
Urochordates
[edit]- Ciona intestinalis, a tunicate, Ciona (2003[7])
- Ciona savignyi, a tunicate Ciona (2007[8])
Cephalochordates
[edit]- Branchiostoma floridae, a lancelet Branchiostoma (2008[9])
Cyclostomes
[edit]- Petromyzon marinus, a lamprey Petromyzon (2009[10])
Cartilaginous Fish
[edit]- Callorhinchus milii, an elephant shark Callorhinchus (2007[11])
Bony Fish
[edit]- Danio rerio, Danio a zebrafish (2007[12]) (order Cypriniformes)
- Gadus morhua, Gadus, Atlantic cod (2011[13]) (order Gadiformes)
- Gasterosteus aculeatus, Gasterosteus, three-spined stickleback (2006, 2012[14]) (order Gasterosteiformes)
- Latimeria chalumnae, Latimeria, West Indian Ocean coelacanth and oldest known living lineage of Sarcopterygii ([15]) (order Coelacanthiformes)
- Oryzias latipes, Oryzias, medaka (2007)[16] (order Beloniformes)
- Takifugu rubripes, Takifugu, a puffer fish ([17] International Fugu Genome Consortium[18] 2002[19]) (order Tetraodontiformes)
- Tetraodon nigroviridis, Tetraodon, a puffer fish (2004[20]) (order Tetraodontiformes)
Amphibians
[edit]Reptiles and Birds
[edit]- Anolis carolinensis, Anolis, JBL SC #1, green anole lizard (2011[22])
- Ficedula albicollis, Ficedula, collared flycatcher (2012[23])
- Gallus gallus, Gallus, chicken (2004[24])
Mammals
[edit]- Bos grunniens, Bos, yak 2012 ([28])
- Bos primigenius taurus, Bos primigenius, cow 2009 ([29])
- Callithrix jacchus, Callithrix, marmoset (2010[30])
- Canis lupus familiaris, dog (2005[31])
- Equus ferus caballus, Equus ferus, horse (2009[32])
- Erinaceus europaeus, Erinaceus, Western European hedgehog ([33])
- Felis silvestris catus, cat (2007[34])
- Gorilla gorilla, Gorilla, gorilla (2012[35])
- Homo sapiens, Homo, Human (Draft 2001[36][37] Complete 2006[38])
- Homo neanderthalensis, Human (Neanderthal) (Draft 2010[39])
- Macaca mulatta, Macaca, rhesus macaque (2007[41])
- Macropus eugenii, Macropus, kangaroo (2011[42])
- Mus musculus, Mus Strain: C57BL/6J, Mouse (2002[44])
- Myotis lucifugus, Myotis, little brown bat (2010[45])
- Pan paniscus, Pan bonobo (2012[49])
- Pan troglodytes, chimpanzee (2005[50])
- Pongo pygmaeus/Pongo abelii, Pongo orangutan (Borneo/Sumatra) (2011[51])
- Rattus norvegicus, Rattus rat (2004[52])
- Sarcophilus harrisii, Sarcophilus, Tasmanian devil ([53])
- Sus scrofa, Pig (2012[54])
Protostomia
[edit]Insects
[edit]- Acromyrmex echinatior colony Ae372 Acromyrmex Ant (Panamanian leafcutter) (2011[56])
- Acyrthosiphon pisum, Aphid Acyrthosiphon (Pea aphid) (2010[57])
- Aedes aegypti Strain:LVPib12, Aedes Mosquito (Vector of dengue fever, etc.) (2007[58])
- Anopheles gambiae Strain: S, Mosquito (Vector of malaria) (2010[60])
- Apis mellifera Bee (Honey bee), Apis (Model for eusocial behavior) (2006[61])
- Atta cephalotes, Ant Atta (Leaf-cutter ant) (2011[62])
- Bombyx mori Strain:p50T, Bombyx Moth (Domestic silk worm) (2004[63])
- Culex quinquefasciatus, Mosquito Culex (Vector of West Nile virus, filariasis etc.) (2010[65])
- Drosophila ananassae, Fruit fly Drosophila (2007[66])
- Drosophila biarmipes, Fruit fly (2011[67])
- Drosophila bipectinata, Fruit fly (2011[67])
- Drosophila erecta, Fruit fly (2007[66])
- Drosophila elegans, Fruit fly (2011[67])
- Drosophila eugracilis, Fruit fly (2011[67])
- Drosophila ficusphila, Fruit fly (2011[67])
- Drosophila grimshawi, Fruit fly (2007[66])
- Drosophila kikkawai, Fruit fly (2011[67])
- Drosophila melanogaster, Fruit fly (Model organism) (2000[68])
- Drosophila mojavensis, Fruit fly (2007[66])
- Drosophila persimilis, Fruit fly (2007[66])
- Drosophila pseudoobscura, Fruit fly (2005[69])
- Drosophila rhopaloa, Fruit fly (2011[67])
- Drosophila santomea, Fruit fly ([70])
- Drosophila sechellia, Fruit fly (2007[66])
- Drosophila simulans, Fruit fly (2007[66])
- Drosophila takahashi, Fruit fly (2011[67])
- Drosophila virilis, Fruit fly (2007[66])
- Drosophila willistoni, Fruit fly (2007[66])
- Drosophila yakuba, Fruit fly (2007[66])
- Herpegnathos saltator, Ant Herpegnathos (2010[64])
- Linepithema humile, Ant Linepithema (Argentine ant) (2011[71])
- Nasonia giraulti, Wasp Nasonia (Parasitoid wasp) (2010[72])
- Nasonia longicornis, Wasp (Parasitoid wasp) (2010[72])
- Nasonia vitripennis, Wasp (Parasitoid wasp; Model organism) (2010[72])
- Pediculus humanus, Louse Pediculus (Sucking louse; Parasite) (2010[73])
- Pogonomyrmex barbatus, Ant Pogonomyrmex (red harvester ant) (2011[74])
- Solenopsis invicta, Ant Solenopsis (fire ant) (2011[75])
- Tribolium castaneum Strain:GA-2, Tribolium Beetle (Red flour beetle) (2008[76])
Crustaceans
[edit]Chelicerates
[edit]- Ixodes scapularis, Ixodes deer tick (vector of meningitis and Lyme disease) (2008[80])
Molluscs
[edit]- Crassostrea gigas, Crassostrea Pacific oyster (2012[82])
Platyhelminthes
[edit]- Clonorchis sinensis, Clonorchis Liver fluke (Human pathogen) (Draft 2011[83])
- Schistosoma haematobium, Schistosoma Schistosome (Human pathogen) (2012[84])
- Schistosoma japonicum, Schistosome (Human pathogen) (2009[85])
- Schistosoma mansoni, Schistosome (Human pathogen) (2009,[86] 2012[87])
- Schmidtea mediterranea, Schmidtea Planarian (Model organism) (2006[88][89])
Nematodes
[edit]- Ascaris suum, Ascaris Human pathogen (2011 [90])
- Brugia malayiStrain:TRS Brugia, Human pathogen (2007[91])
- Caenorhabditis elegans Strain:Bristol N2, Model organism (1998[93])
- Meloidogyne hapla, Meloidogyne Northern root-knot nematode (Plant pathogen) (2008[94])
- Meloidogyne incognita, Southern root-knot nematode (Plant pathogen) (2008[95])
Annelids
[edit]- Capitella teleta, Capitella Polychaete (2007[97])
- Helobdella robusta, Helobdella Leech (2007[98])
References
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- ^ “Acorn worm Genome Project”, in (Please provide the book title or journal name)[1], (Can we date this quote?)
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- ^ Libants SCarr KWu Het al. (2009) “The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage”, in BMC Evolutionary Biology, volume 9, , page 180
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- ^ “Ensembl genome browser 59: Danio rerio - Description - Search Ensembl Zebrafish”, in (Please provide the book title or journal name)[2], Ensembl.org, 2010 August 27 (last accessed)
- ^ Ensembl Pre entry
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- ^ Ensembl entry
- ^ Template:cite doi
- ^ International Fugu Genome Consortium. Forth Genome Assembly
- ^ International Fugu Genome Consortium
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- ↑ 23.0 23.1 Hans Ellegren H., Smeds L., Burri, R. (2012) “The genomic landscape of species divergence in Ficedula flycatchers”, in Nature, volume 491, , pages 756–760
- ^ International Chicken Genome Sequencing Consortium. (2004 December) “Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution”, in Nature, volume 432, number 7018, →Bibcode, , →PMID, pages 695–716
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- ^ Qiang Qiu, Guojie Zhang, Tao Ma, Wubin Qian, Junyi Wang, Zhiqiang Ye, Changchang Cao, Quanjun Hu, Jaebum Kim, Denis M Larkin, Loretta Auvil, Boris Capitanu, Jian Ma, Harris A Lewin, Xiaoju Qian, Yongshan Lang, Ran Zhou, et al. (2012) “The yak genome and adaptation to life at high altitude.”, in Nature Genetics, volume 44, , pages 895–899
- ^ Victoria Gill (2009 April 23) “Cow genome 'to transform farming'”, in (Please provide the book title or journal name)[3], BBC News
- ^ Ensembl entry
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- ↑ 33.0 33.1 “Mammalian Genome Project”, in (Please provide the book title or journal name)[4], MIT, (Can we date this quote?)
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- ^ Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W. (2010) “A Draft Sequence of the Neandertal Genome”, in Science, volume 328, number 5979, →Bibcode, , →PMID, pages 710–22
- ^ UCSC browser entry
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- ^ Ensembl entry
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- ^ Ensembl entry
- ^ Ensembl entry
- ^ Prufer K, Much K, Hellmann I, et al. ((Can we date this quote?)) “The bonobo genome compared with the chimpanzee and human genomes”, in Nature, →Bibcode,
- ^ Chimpanzee Sequencing and Analysis Consortium. (2005 September) “Initial sequence of the chimpanzee genome and comparison with the human genome”, in Nature, volume 437, number 7055, →Bibcode, , →PMID, pages 69–87
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- ^ Ensembl entry
- ^ Martien A. M. Groenen M. A. M., Archibald A. L., Uenishi H., et al. (2012) “Analyses of pig genomes provide insight into porcine demography and evolution”, in Nature, volume 491, , pages 393–398
- ^ Lindblad-Toh K, Garber M, Zuk O, et al. (2011 October 12) “A high-resolution map of human evolutionary constraint using 29 mammals”, in Nature, volume 478, number 7370, , →PMID, pages 476-482
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- ↑ 60.0 60.1 Lua error in Module:parameters at line 754: Parameter "display-authors" is not used by this template.
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- ↑ 66.00 66.01 66.02 66.03 66.04 66.05 66.06 66.07 66.08 66.09 Drosophila 12 Genomes Consortium (2007) “Evolution of genes and genomes on the Drosophila phylogeny”, in Nature, volume 450, number 7167, →Bibcode, , pages 203–218
- ↑ 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 http://www.hgsc.bcm.tmc.edu/project-species-i-Drosophila_modENCODE.hgsc
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- ^ http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html
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- ^ Tribolium Genome Sequencing Consortium (2008 April) “The genome of the model beetle and pest Tribolium castaneum”, in Nature, volume 452, number 7190, →Bibcode, , →PMID, pages 949–55
- ^ http://daphnia.cgb.indiana.edu/
- ^ “Daphnia pulex v1.0”, in (Please provide the book title or journal name)[5], DOE Joint Genome Institute, 2009 November 29 (last accessed)
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- ^ NCBI accession entry
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- ^ Zhang G, Fang X, Guo X. (2012) “The oyster genome reveals stress adaptation and complexity of shell formation”, in Nature,
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- ^ The Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium (2009) “The Schistosoma japonicum genome reveals features of host-parasite interplay”, in Nature, volume 460, number 7253, →Bibcode, , →PMID, pages 345–351
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- ^ Protasio AV, Tsai IJ, Babbage A, et al. (2012 January) “A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni”, in PLoS Negl Trop Dis., volume 6, number 1, →PMID, page e1455
- ^ “Project”, in (Please provide the book title or journal name)[6], (Can we date this quote?)
- ^ “SmedGD”, in (Please provide the book title or journal name), (Can we date this quote?)
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- ^ C. elegans Sequencing Consortium. (1998 December) “Genome sequence of the nematode C. elegans: a platform for investigating biology”, in Science[7], volume 282, number 5396, , →PMID, pages 2012–8
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- ^ Christoph Dieterich, Sandra W Clifton, Lisa N Schuster, Asif Chinwalla, Kimberly Delehaunty, Iris Dinkelacker, Lucinda Fulton, Robert Fulton, Jennifer Godfrey, Pat Minx, Makedonka Mitreva, Waltraud Roeseler, Huiyu Tian, Hanh Witte, Shiaw-Pyng Yang, Richard K Wilson & Ralf J Sommer (2008 September) “The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism”, in Nature Genetics, volume 40, number 10, , →PMID, pages 1193 of 1193–8
- ^ “JGI: Capitella teleta”, in (Please provide the book title or journal name)[8], (Can we date this quote?)
- ^ “JGI: Helobdella robusta”, in (Please provide the book title or journal name)[9], (Can we date this quote?)